10X Genomics linked-reads of the P24X0 chromosomal race of the Vandie... - SRA

SRX9285676: 10X Genomics linked-reads of the P24X0 chromosomal race of the Vandiemella viatica species group: adult male
1 ILLUMINA (HiSeq X Ten) run: 68.4M spots, 20.6G bases, 7.8Gb downloads

Design: Sequencing libraries were prepared as recommended by Chromium Genome preparation kit (10X Genomics, Inc., Pleasanton, CA, USA; Cat No. 120215). Paired-end read sequencing (2x150 bp) was performed on the Illumina HiSeq X (Illumina, Inc., San Diego, CA, USA) using the Chromium library.

Submitted by: Uppsala University

Study: Vandiemenella viatica Genome sequencing and assembly.

PRJNA668746 • SRP287256 • All experiments • All runs

show Abstracthide Abstract

This BioProject contains genomic and transcriptomic data related to the paper Palacios-Gimenez et al., "Too much too many: comparative analysis of morabine grasshopper genomes reveals highly abundant transposable elements and rapidly proliferating satellite DNA repeats". We combined linked-read genomics with transcriptomics to assemble, characterize, and compare the structure of the repetitive DNA and its contribution to genome evolution, in four chromosomal races of the morabine grasshopper Vandiemenella viatica species complex.

Sample: Invertebrate sample from Vandiemenella viatica

SAMN16422578 • SRS7513184 • All experiments • All runs

Organism: Vandiemenella viatica

Library:

Name: TK1_S5_L004

Instrument: HiSeq X Ten

Strategy: WGS

Source: GENOMIC

Selection: unspecified

Layout: PAIRED

Runs: 1 run, 68.4M spots, 20.6G bases, 7.8Gb

Run	# of Spots	# of Bases	Size	Published
SRR12817613	68,362,116	20.6G	7.8Gb	2020-10-13

ID:: 12114365

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Recent activity